Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-octaprenyl-6-methoxyphenol hydroxylase | shim_26410 | Q2RMZ4 | Positive | 2630950 - 2632164 | 43425.9 |
| hypothetical protein | shim_26420 | Q5LMZ1 | Negative | 2632242 - 2632433 | 7001.46 |
| lon protease 2 | shim_26430 | Not Available | Negative | 2632430 - 2633074 | 24270.2 |
| thioredoxin | shim_26440 | P77395 | Negative | 2633102 - 2634028 | 32179.8 |
| exodeoxyribonuclease iii | shim_26450 | P0A1B0 | Negative | 2634082 - 2634870 | 29468.7 |
| transcriptional regulatory protein yycf | shim_26460 | Not Available | Negative | 2635129 - 2635815 | 25825.1 |
| gtp cyclohydrolase-2 | shim_26470 | P43525 | Positive | 2635988 - 2637079 | 38925.2 |
| l,d-transpeptidase catalytic domain | shim_26480 | Not Available | Positive | 2637076 - 2637570 | 18414.0 |
| hypothetical protein | shim_26490 | Not Available | Negative | 2637574 - 2637966 | 13904.7 |
| hypothetical protein | shim_26500 | Not Available | Negative | 2638108 - 2638500 | 14151.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
