Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative hth-type transcriptional regulator ydfh | shim_26210 | Not Available | Negative | 2610870 - 2611565 | 25512.7 |
| hypothetical protein | shim_26220 | Not Available | Positive | 2611668 - 2612270 | 21287.5 |
| ab hydrolase superfamily protein ydjp | shim_26230 | Q6F9F4 | Positive | 2612242 - 2613051 | 29125.9 |
| p-hydroxyphenylacetate 3-hydroxylase, reductase component | shim_26240 | Q92ZM6 | Positive | 2613048 - 2613965 | 32542.2 |
| alkanal monooxygenase alpha chain | shim_26250 | Q6F9F6 | Positive | 2613969 - 2615006 | 39188.6 |
| nad/nadp-dependent betaine aldehyde dehydrogenase 1 | shim_26260 | Q6F9F7 | Positive | 2615029 - 2616492 | 51750.7 |
| free methionine-r-sulfoxide reductase | shim_26270 | Not Available | Negative | 2616641 - 2617099 | 16323.3 |
| carboxylesterase nlhh | shim_26280 | P95125 | Negative | 2617103 - 2618146 | 37598.5 |
| acetyl-coa acetyltransferase | shim_26290 | P44873 | Negative | 2618207 - 2619379 | 40332.5 |
| anti-sigma-b factor antagonist | shim_26300 | Not Available | Positive | 2619561 - 2619890 | 12062.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
