Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| eama-like transporter family protein | shim_26110 | Q9KVF1 | Negative | 2600170 - 2601075 | 33054.6 |
| bifunctional homocysteine s-methyltransferase/5,10-methylenetetrahydrofolate reductase | shim_26120 | Not Available | Negative | 2601196 - 2602137 | 33665.1 |
| 4-methylaminobutanoate oxidase (formaldehyde-forming) | shim_26130 | Q8GAI3 | Negative | 2602238 - 2604688 | 89683.7 |
| homocysteine s-methyltransferase | shim_26140 | Not Available | Negative | 2604784 - 2605686 | 30971.1 |
| 4-methylaminobutanoate oxidase (formaldehyde-forming) | shim_26150 | Not Available | Negative | 2605683 - 2608133 | 90202.0 |
| homoserine/homoserine lactone efflux protein | shim_26160 | Not Available | Negative | 2608145 - 2608768 | 21321.8 |
| glutathione-dependent formaldehyde-activating enzyme | shim_26170 | Not Available | Negative | 2608771 - 2609073 | 10978.8 |
| hth-type transcriptional regulator puur | shim_26180 | Not Available | Negative | 2609154 - 2609741 | 21641.6 |
| carboxymuconolactone decarboxylase family protein | shim_26190 | Not Available | Negative | 2610171 - 2610572 | 14799.7 |
| hypothetical protein | shim_26200 | Not Available | Negative | 2610584 - 2610877 | 10766.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
