Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_26010 | Not Available | Negative | 2589613 - 2589888 | 8315.48 |
| hypothetical protein | shim_26020 | Not Available | Positive | 2590119 - 2590856 | 26651.5 |
| ssra-binding protein | shim_26030 | Q1GDQ2 | Negative | 2590839 - 2591357 | 19885.1 |
| ribosomal rna large subunit methyltransferase l | shim_26040 | Q9K0V4 | Positive | 2591465 - 2592577 | 39655.8 |
| cypemycin methyltransferase | shim_26050 | Not Available | Positive | 2592672 - 2593397 | 26358.3 |
| error-prone dna polymerase | shim_26060 | Not Available | Negative | 2593534 - 2596455 | 108257.0 |
| ribosomal large subunit pseudouridine synthase a | shim_26070 | P0AA37 | Negative | 2596593 - 2597246 | 24644.8 |
| snoal-like domain protein | shim_26080 | Not Available | Positive | 2597375 - 2597785 | 15399.5 |
| hypothetical protein | shim_26090 | Not Available | Positive | 2597885 - 2599456 | 55734.3 |
| hypothetical protein | shim_26100 | Not Available | Positive | 2599460 - 2600173 | 25704.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
