Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_25910 | Not Available | Negative | 2580953 - 2581261 | 11386.5 |
| nad(p)h azoreductase | shim_25920 | Not Available | Negative | 2581363 - 2582469 | 39856.7 |
| putative hth-type transcriptional regulator yybr | shim_25930 | Not Available | Positive | 2582549 - 2583211 | 24254.0 |
| putative peroxiredoxin | shim_25940 | Not Available | Negative | 2583411 - 2584226 | 29188.8 |
| hypothetical protein | shim_25950 | Not Available | Negative | 2584279 - 2584560 | 9926.91 |
| hth-type transcriptional activator ampr | shim_25960 | P52685 | Positive | 2584656 - 2585528 | 32378.2 |
| aromatic-amino-acid aminotransferase | shim_25970 | Not Available | Negative | 2585742 - 2586926 | 42890.5 |
| 3-mercaptopyruvate sulfurtransferase | shim_25980 | O64530 | Negative | 2586926 - 2587783 | 31253.2 |
| hypothetical protein | shim_25990 | Not Available | Positive | 2587847 - 2588332 | 17845.6 |
| hypothetical protein | shim_26000 | Not Available | Positive | 2588280 - 2589425 | 41762.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
