Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| urease accessory protein uref | shim_02270 | Q161S5 | Negative | 214044 - 214715 | 24107.7 |
| urease accessory protein uree 1 | shim_02280 | Q1GJQ1 | Negative | 214675 - 215172 | 18147.3 |
| hypothetical protein | shim_02290 | Not Available | Negative | 215198 - 215425 | 8392.2 |
| urease subunit alpha 1 | shim_02300 | Q5LSQ2 | Negative | 215577 - 217316 | 61677.6 |
| hypothetical protein | shim_02310 | Not Available | Negative | 217363 - 217950 | 20466.5 |
| urease subunit beta 1 | shim_02320 | Q1GJP7 | Negative | 217977 - 218285 | 10956.1 |
| hypothetical protein | shim_02330 | Not Available | Negative | 218282 - 218449 | 5699.09 |
| urease subunit gamma | shim_02340 | Q161T2 | Negative | 218465 - 218767 | 10985.5 |
| urease accessory protein ured | shim_02350 | Q161T3 | Negative | 218771 - 219550 | 28196.9 |
| ribulose-phosphate 3-epimerase | shim_02360 | P51012 | Positive | 219884 - 220567 | 24151.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
