Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_25810 | Not Available | Positive | 2574220 - 2574570 | 12277.1 |
| hypothetical protein | shim_25820 | Not Available | Positive | 2574617 - 2575102 | 16960.5 |
| nad-dependent protein deacylase | shim_25830 | Q9A2S6 | Negative | 2575147 - 2575851 | 25021.5 |
| hth-type transcriptional regulator tdfr | shim_25840 | P42722 | Negative | 2576030 - 2576995 | 35350.8 |
| hypothetical protein | shim_25850 | Not Available | Negative | 2577059 - 2577379 | 11587.8 |
| hypothetical protein | shim_25860 | Not Available | Negative | 2577530 - 2578180 | 23547.7 |
| tetracenomycin-f1 monooxygenase | shim_25870 | Not Available | Positive | 2578313 - 2578633 | 12184.5 |
| universal stress protein f | shim_25880 | P67092 | Positive | 2578652 - 2579059 | 14663.7 |
| hypothetical protein | shim_25890 | Not Available | Positive | 2579119 - 2579625 | 18077.4 |
| hypothetical protein | shim_25900 | Not Available | Negative | 2579770 - 2580612 | 31594.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
