Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_25710 | Not Available | Negative | 2563220 - 2563783 | 20468.5 |
| aspartate carbamoyltransferase | shim_25720 | Q5LX75 | Negative | 2563893 - 2564861 | 35532.9 |
| uracil dna glycosylase superfamily protein | shim_25730 | Q5SKC5 | Positive | 2565034 - 2565825 | 28413.3 |
| calcineurin-like phosphoesterase superfamily domain protein | shim_25740 | Not Available | Positive | 2565822 - 2566439 | 21665.1 |
| molybdenum cofactor biosynthesis protein b | shim_25750 | P0AF00 | Positive | 2566446 - 2566988 | 19901.8 |
| toluene efflux pump periplasmic linker protein ttgd precursor | shim_25760 | Not Available | Positive | 2567126 - 2568580 | 52546.1 |
| efflux pump membrane transporter bepe | shim_25770 | Not Available | Positive | 2568584 - 2571976 | 121670.0 |
| hypothetical protein | shim_25780 | Not Available | Negative | 2571968 - 2572768 | 28752.4 |
| hypothetical protein | shim_25790 | Q163D2 | Positive | 2572933 - 2573517 | 20612.5 |
| 50s ribosomal protein l28 | shim_25800 | Q5LUS9 | Positive | 2573828 - 2574118 | 10429.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
