Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type i secretion system membrane fusion protein prse | shim_25510 | Not Available | Negative | 2544605 - 2545921 | 48458.3 |
| type i secretion system atp-binding protein prsd | shim_25520 | Q7ANN4 | Negative | 2545918 - 2547651 | 62161.7 |
| putative phospholipid-binding lipoprotein mlaa precursor | shim_25530 | P76506 | Positive | 2547828 - 2548607 | 28243.1 |
| toluene tolerance, ttg2 | shim_25540 | Not Available | Positive | 2548594 - 2549196 | 21934.6 |
| penicillin-binding protein 2d | shim_25550 | P02919 | Negative | 2549313 - 2551481 | 78055.1 |
| nitrogen regulatory protein p-ii | shim_25560 | O54053 | Positive | 2551740 - 2552078 | 12167.9 |
| ammonium transporter nrga | shim_25570 | P54147 | Positive | 2552104 - 2553420 | 45943.7 |
| hypothetical protein | shim_25580 | Not Available | Negative | 2553507 - 2553821 | 11708.2 |
| hemin uptake protein hemp | shim_25590 | Not Available | Positive | 2554037 - 2554195 | 5733.88 |
| hypothetical protein | shim_25600 | Not Available | Positive | 2554192 - 2554668 | 16943.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
