Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar fermentation stimulation protein a | shim_25410 | Q1GDR6 | Positive | 2536628 - 2537338 | 25914.0 |
| methionine aminopeptidase | shim_25420 | Q9ZCD3 | Positive | 2537582 - 2538448 | 31338.2 |
| hypothetical protein | shim_25430 | Not Available | Negative | 2538619 - 2539143 | 18633.6 |
| ribosomal rna small subunit methyltransferase d | shim_25440 | O34331 | Negative | 2539344 - 2539907 | 20002.8 |
| rhodocoxin reductase | shim_25450 | X5CY81 | Negative | 2539917 - 2541125 | 42631.7 |
| putative peroxiredoxin | shim_25460 | Q69TY4 | Positive | 2541212 - 2541700 | 16999.4 |
| putative pterin-4-alpha-carbinolamine dehydratase | shim_25470 | Q16BN1 | Negative | 2541743 - 2542039 | 11028.1 |
| hypothetical protein | shim_25480 | Not Available | Negative | 2542036 - 2543223 | 43817.2 |
| glycerophosphoryl diester phosphodiesterase | shim_25490 | Not Available | Negative | 2543287 - 2544057 | 27736.9 |
| endoribonuclease l-psp | shim_25500 | Not Available | Negative | 2544067 - 2544528 | 15637.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
