Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative d,d-dipeptide transport system permease protein ddpc | shim_25210 | A0A0H2ZFV0 | Negative | 2515648 - 2516463 | 29195.4 |
| glutathione transport system permease protein gsic | shim_25220 | Not Available | Negative | 2516474 - 2517430 | 34651.8 |
| glutathione-binding protein gsib precursor | shim_25230 | P33590 | Negative | 2517432 - 2519015 | 57029.2 |
| cocaine esterase | shim_25240 | Not Available | Negative | 2519302 - 2521290 | 73239.5 |
| hypothetical protein | shim_25250 | Q9R9S0 | Negative | 2521364 - 2521999 | 22298.2 |
| hydrogen cyanide synthase subunit hcnb | shim_25260 | Q59160 | Negative | 2521992 - 2523386 | 49467.9 |
| hydrogen cyanide synthase subunit hcna | shim_25270 | Not Available | Negative | 2523373 - 2523642 | 9640.77 |
| hydrogen cyanide synthase subunit hcnc precursor | shim_25280 | Q92XP5 | Negative | 2523665 - 2524774 | 38470.8 |
| bifunctional protein folc | shim_25290 | P08192 | Negative | 2525082 - 2526386 | 46165.7 |
| acetyl-coenzyme a carboxylase carboxyl transferase subunit beta | shim_25300 | Q28WD5 | Negative | 2526417 - 2527382 | 35402.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
