Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative multidrug resistance abc transporter atp-binding/permease protein yheh | shim_25110 | Not Available | Positive | 2506042 - 2509080 | 112246.0 |
| Trna-phe | Not Available | Not Available | Positive | 2509692 - 2509766 | Not Available |
| dna gyrase inhibitor yacg | shim_25130 | A8IC06 | Negative | 2509846 - 2510028 | 6736.85 |
| ribonuclease g | shim_25140 | A0A0H3NGK0 | Negative | 2510025 - 2511047 | 36622.7 |
| maf-like protein yhde | shim_25150 | Q1GLE1 | Negative | 2511059 - 2511634 | 20528.8 |
| translation initiation factor if-1 | shim_25160 | A8LS17 | Negative | 2511666 - 2511884 | 8312.23 |
| protein arsc | shim_25170 | Not Available | Negative | 2512099 - 2512569 | 17141.0 |
| hypothetical protein | shim_25180 | Q1GLD5 | Negative | 2512574 - 2513053 | 18219.7 |
| gluconate 5-dehydrogenase | shim_25190 | P0A9Q0 | Positive | 2513181 - 2514017 | 28679.4 |
| glutathione import atp-binding protein gsia | shim_25200 | Q1RE96 | Negative | 2514014 - 2515651 | 59149.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
