Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| biotin transport atp-binding protein biom | shim_02170 | Q7N0N3 | Negative | 205102 - 205776 | 24561.8 |
| trna 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein mnmc | shim_02180 | Not Available | Negative | 205938 - 207131 | 42966.9 |
| putative glycosyltransferase epsh | shim_02190 | Not Available | Negative | 207128 - 208132 | 37231.9 |
| tdp-4-oxo-6-deoxy-alpha-d-glucose-3, 4-oxoisomerase | shim_02200 | Not Available | Negative | 208165 - 208563 | 14715.6 |
| trab family protein | shim_02210 | Not Available | Negative | 208675 - 209688 | 38459.9 |
| sialic acid trap transporter permease protein siat | shim_02220 | Not Available | Negative | 209751 - 211178 | 50561.5 |
| tripartite atp-independent periplasmic transporter, dctq component | shim_02230 | Not Available | Negative | 211171 - 211806 | 23118.7 |
| bacterial extracellular solute-binding protein, family 7 | shim_02240 | Not Available | Negative | 211876 - 212892 | 36539.2 |
| urease accessory protein ureg | shim_02250 | C3MGH8 | Negative | 213006 - 213635 | 22316.9 |
| hypothetical protein | shim_02260 | Not Available | Negative | 213637 - 214047 | 14822.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
