Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tripartite atp-independent periplasmic transporter, dctq component | shim_24800 | Not Available | Negative | 2478582 - 2479121 | 19887.9 |
| stringent starvation protein a | shim_24810 | O80662 | Negative | 2479145 - 2479909 | 28896.4 |
| sialic acid-binding periplasmic protein siap precursor | shim_24820 | Not Available | Negative | 2480028 - 2481038 | 36117.1 |
| hth-type transcriptional repressor csir | shim_24830 | Not Available | Positive | 2481258 - 2482037 | 28842.4 |
| alpha/beta hydrolase family protein | shim_24840 | Not Available | Negative | 2482507 - 2482824 | 11008.4 |
| long-chain-fatty-acid--coa ligase | shim_24850 | Q00594 | Positive | 2483085 - 2484707 | 58918.5 |
| soluble epoxide hydrolase | shim_24860 | O31581 | Positive | 2484700 - 2485590 | 32525.7 |
| nitronate monooxygenase | shim_24870 | Not Available | Positive | 2485774 - 2486763 | 35151.8 |
| bifunctional rnase h/acid phosphatase | shim_24880 | Not Available | Positive | 2486760 - 2487431 | 24376.8 |
| putative aminoglycoside phosphotransferase | shim_24890 | Q6JQN1 | Positive | 2487463 - 2488488 | 37435.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
