Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_24700 | Not Available | Negative | 2469005 - 2469646 | 23598.5 |
| quercetin 2,3-dioxygenase | shim_24710 | Not Available | Negative | 2470171 - 2470638 | 16729.1 |
| nodulation protein d 2 | shim_24720 | P10183 | Positive | 2470733 - 2471668 | 33971.0 |
| osmc-like protein | shim_24730 | Not Available | Negative | 2472235 - 2473416 | 42472.8 |
| hypothetical protein | shim_24740 | Not Available | Negative | 2473419 - 2473703 | 10573.5 |
| quercetin 2,3-dioxygenase | shim_24750 | Not Available | Negative | 2473700 - 2474173 | 17262.2 |
| (s)-1-phenylethanol dehydrogenase | shim_24760 | Q988B7 | Negative | 2474177 - 2474932 | 26335.6 |
| tetrachloro-p-hydroquinone reductive dehalogenase | shim_24770 | P30347 | Negative | 2474950 - 2475768 | 30634.8 |
| vanillin dehydrogenase | shim_24780 | O69763 | Negative | 2475765 - 2477204 | 51407.5 |
| sialic acid trap transporter permease protein siat | shim_24790 | Not Available | Negative | 2477224 - 2478585 | 48297.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
