Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| catechol-2,3-dioxygenase | shim_24300 | P54721 | Negative | 2428811 - 2429296 | 17247.1 |
| hypothetical protein | shim_24310 | Not Available | Negative | 2429395 - 2429487 | 3380.2 |
| glycine betaine transporter opud | shim_24320 | P54417 | Negative | 2429484 - 2430977 | 53366.0 |
| tryptophan--trna ligase | shim_24330 | Q98C31 | Negative | 2431149 - 2432186 | 37885.6 |
| rhomboid family protein | shim_24340 | Not Available | Positive | 2432294 - 2432980 | 24406.3 |
| acid-resistance membrane protein | shim_24350 | Not Available | Negative | 2432982 - 2433506 | 17766.5 |
| putative peptidoglycan biosynthesis protein murj | shim_24360 | O05467 | Negative | 2433596 - 2435140 | 55460.1 |
| bifunctional uridylyltransferase/uridylyl-removing enzyme | shim_24370 | Q5LWE5 | Negative | 2435137 - 2437944 | 105934.0 |
| hypothetical protein | shim_24380 | Not Available | Negative | 2437904 - 2439070 | 39909.7 |
| ribosomal rna small subunit methyltransferase i | shim_24390 | Q98DM9 | Positive | 2439165 - 2440031 | 30621.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
