Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribose import atp-binding protein rbsa | shim_24200 | Not Available | Negative | 2419879 - 2421456 | 56713.4 |
| hypothetical protein | shim_24210 | Not Available | Negative | 2421453 - 2421809 | 12621.5 |
| membrane lipoprotein tmpc precursor | shim_24220 | O05252 | Negative | 2421894 - 2422883 | 34366.8 |
| mycothiol acetyltransferase | shim_24230 | Not Available | Negative | 2423041 - 2423463 | 15342.9 |
| trna threonylcarbamoyladenosine biosynthesis protein tsab | shim_24240 | Q87RD1 | Negative | 2423456 - 2424046 | 20329.5 |
| glutathione-dependent formaldehyde-activating enzyme | shim_24250 | Not Available | Negative | 2424056 - 2424496 | 15699.5 |
| fe/s biogenesis protein nfua | shim_24260 | Q9LIG6 | Negative | 2424486 - 2425049 | 19817.5 |
| universal stress protein family protein | shim_24270 | Not Available | Negative | 2425156 - 2425611 | 16761.3 |
| branched-chain-amino-acid aminotransferase | shim_24280 | O27481 | Negative | 2425736 - 2426599 | 31274.9 |
| hypothetical protein | shim_24290 | Not Available | Negative | 2426781 - 2428667 | 67916.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
