Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hth-type transcriptional regulator dmlr | shim_24000 | P30864 | Positive | 2398185 - 2399084 | 32989.0 |
| n-ethylmaleimide reductase | shim_24010 | Q6Z965 | Negative | 2399222 - 2400328 | 38873.7 |
| hth-type transcriptional regulator dmlr | shim_24020 | Not Available | Positive | 2400428 - 2401345 | 33819.5 |
| hypothetical protein | shim_24030 | Not Available | Negative | 2401676 - 2402185 | 18459.1 |
| hypothetical protein | shim_24040 | Not Available | Negative | 2402248 - 2402655 | 13837.6 |
| nad(p)h azoreductase | shim_24050 | Q4WZ69 | Negative | 2402685 - 2403512 | 29094.4 |
| hth-type transcriptional regulator virs | shim_24060 | Not Available | Positive | 2403692 - 2404735 | 38455.0 |
| purine nucleoside phosphorylase deod-type | shim_24070 | Q28U96 | Negative | 2405247 - 2405951 | 25058.1 |
| h-ns histone family protein | shim_24080 | P42505 | Negative | 2406087 - 2406407 | 11844.2 |
| methylmalonyl-coa mutase | shim_24090 | Q3IZ90 | Negative | 2406595 - 2408574 | 71939.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
