Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_23900 | Not Available | Negative | 2390996 - 2391598 | 21248.1 |
| zinc-type alcohol dehydrogenase-like protein | shim_23910 | Q7T3C7 | Negative | 2391555 - 2392592 | 36327.6 |
| hypothetical protein | shim_23920 | Not Available | Negative | 2392606 - 2393334 | 26129.8 |
| hth-type transcriptional regulator tfds | shim_23930 | Q05840 | Positive | 2393420 - 2394352 | 34516.1 |
| dna-binding transcriptional repressor fabr | shim_23940 | Not Available | Negative | 2394355 - 2394969 | 23121.7 |
| hypothetical protein | shim_23950 | Not Available | Positive | 2395098 - 2395523 | 15083.9 |
| hypothetical protein | shim_23960 | Not Available | Negative | 2395459 - 2396073 | 21970.1 |
| hypothetical protein | shim_23970 | Not Available | Negative | 2396134 - 2396331 | 7477.92 |
| haloalkane dehalogenase | shim_23980 | P53750 | Negative | 2396413 - 2397393 | 36716.4 |
| pyridoxamine 5'-phosphate oxidase | shim_23990 | Not Available | Negative | 2397438 - 2398067 | 23571.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
