Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulatory protein uhpa | shim_02070 | Not Available | Positive | 196019 - 196555 | 20053.4 |
| glycosyltransferase sugar-binding region containing dxd motif protein | shim_02080 | Q9UTR6 | Negative | 196565 - 197296 | 28465.6 |
| transcriptional activator nphr | shim_02090 | Not Available | Positive | 197520 - 198311 | 27984.8 |
| glyoxalase-like domain protein | shim_02100 | Not Available | Positive | 198364 - 198762 | 13991.5 |
| hypothetical protein | shim_02110 | Not Available | Positive | 198759 - 199076 | 11299.5 |
| dihydroxy-acid dehydratase | shim_02120 | Q31QL1 | Positive | 199258 - 201108 | 66344.3 |
| putative acetyl-coa acyltransferase | shim_02130 | Q5HRH3 | Negative | 201191 - 202366 | 39944.9 |
| putative acyl--coa ligase yhft | shim_02140 | O07619 | Negative | 202341 - 203852 | 54427.3 |
| biotin transporter bioy | shim_02150 | Q2KBP7 | Negative | 203861 - 204391 | 18232.2 |
| energy-coupling factor transporter transmembrane protein bion | shim_02160 | Q8G838 | Negative | 204506 - 205102 | 22013.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
