Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| succinate dehydrogenase cytochrome b556 subunit | shim_23800 | Q59659 | Positive | 2381887 - 2382270 | 13726.1 |
| succinate dehydrogenase/fumarate reductase transmembrane subunit | shim_23810 | Not Available | Positive | 2382282 - 2382653 | 13494.0 |
| succinate dehydrogenase flavoprotein subunit | shim_23820 | Q59661 | Positive | 2382665 - 2384470 | 64996.6 |
| hypothetical protein | shim_23830 | Not Available | Positive | 2384480 - 2385310 | 30398.3 |
| succinate dehydrogenase iron-sulfur subunit | shim_23840 | Q59662 | Positive | 2385368 - 2386147 | 29571.7 |
| hypothetical protein | shim_23850 | Not Available | Positive | 2386387 - 2386536 | 5554.34 |
| ksdd-like steroid dehydrogenase | shim_23860 | Q7D9A2 | Positive | 2386651 - 2388291 | 59329.7 |
| hypothetical protein | shim_23870 | Q10082 | Positive | 2388315 - 2389169 | 31147.5 |
| hypothetical protein | shim_23880 | Not Available | Negative | 2389576 - 2390160 | 21212.2 |
| hypothetical protein | shim_23890 | Not Available | Positive | 2390241 - 2390786 | 19681.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
