Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fatty acid hydroxylase superfamily protein | shim_23600 | Not Available | Positive | 2363008 - 2364006 | 37796.6 |
| hypothetical protein | shim_23610 | Not Available | Negative | 2364058 - 2364561 | 17956.8 |
| dihydrolipoyl dehydrogenase 3 | shim_23620 | P95596 | Negative | 2364725 - 2366122 | 48580.9 |
| hypothetical protein | shim_23630 | Not Available | Negative | 2366332 - 2366733 | 14328.0 |
| dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex | shim_23640 | Q8GCY1 | Negative | 2366749 - 2368236 | 51301.7 |
| 2-oxoglutarate dehydrogenase e1 component | shim_23650 | A6WXF0 | Negative | 2368240 - 2371200 | 110341.0 |
| inner membrane protein yhah | shim_23660 | Not Available | Negative | 2371197 - 2371772 | 21212.1 |
| succinyl-coa ligase (adp-forming) subunit alpha | shim_23670 | Q1RH56 | Negative | 2371862 - 2372743 | 30111.3 |
| hypothetical protein | shim_23680 | Not Available | Negative | 2372781 - 2373173 | 14471.5 |
| succinyl-coa ligase (adp-forming) subunit beta | shim_23690 | Q28U74 | Negative | 2373178 - 2374374 | 42474.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
