Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xaa-pro dipeptidase | shim_23200 | O84913 | Negative | 2322253 - 2323362 | 40256.6 |
| hypothetical protein | shim_23210 | D5MTT1 | Positive | 2323522 - 2324208 | 25345.9 |
| co-responsive transcriptional regulator rcom | shim_23220 | Not Available | Positive | 2324294 - 2325388 | 38948.2 |
| carbon monoxide dehydrogenase medium chain | shim_23230 | Not Available | Positive | 2325536 - 2326390 | 30028.7 |
| carbon monoxide dehydrogenase small chain | shim_23240 | Not Available | Positive | 2326413 - 2326907 | 17860.3 |
| carbon monoxide dehydrogenase large chain | shim_23250 | P19919 | Positive | 2326904 - 2329330 | 87754.3 |
| aaa domain (dynein-related subfamily) | shim_23260 | Not Available | Positive | 2329387 - 2330262 | 31806.9 |
| vwa domain containing coxe-like protein | shim_23270 | Not Available | Positive | 2330259 - 2331446 | 43243.0 |
| xdhc and coxi family protein | shim_23280 | Q46808 | Positive | 2331443 - 2332222 | 26717.1 |
| hypothetical protein | shim_23290 | Not Available | Positive | 2332222 - 2332314 | 3528.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
