Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| creatinase | shim_23100 | E1V7W1 | Positive | 2311690 - 2312874 | 43831.1 |
| acetylornithine deacetylase | shim_23110 | O68873 | Positive | 2312878 - 2314035 | 41353.5 |
| leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor | shim_23120 | Not Available | Positive | 2314164 - 2315303 | 40108.4 |
| high-affinity branched-chain amino acid transport system permease protein livh | shim_23130 | Not Available | Positive | 2315357 - 2316274 | 31416.6 |
| leucine/isoleucine/valine transporter permease subunit | shim_23140 | Not Available | Positive | 2316276 - 2317259 | 34939.4 |
| lipopolysaccharide export system atp-binding protein lptb | shim_23150 | P0A194 | Positive | 2317252 - 2318004 | 26922.7 |
| high-affinity branched-chain amino acid transport atp-binding protein livf | shim_23160 | P21630 | Positive | 2318001 - 2318690 | 24520.9 |
| 2-dehydro-3-deoxygluconokinase | shim_23170 | P44482 | Negative | 2318725 - 2319618 | 31421.2 |
| putative hth-type transcriptional regulator ydfh | shim_23180 | P0ACM2 | Negative | 2319618 - 2320271 | 24172.8 |
| cyclic di-gmp phosphodiesterase gmr | shim_23190 | Q9ABX9 | Positive | 2320605 - 2322203 | 58926.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
