Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fumarate reductase flavoprotein subunit precursor | shim_23000 | P0C278 | Negative | 2299341 - 2300723 | 49602.7 |
| hth-type transcriptional regulator cynr | shim_23010 | P52696 | Positive | 2300804 - 2301691 | 31164.6 |
| (s)-sulfolactate dehydrogenase | shim_23020 | Not Available | Negative | 2301688 - 2302668 | 35615.3 |
| universal stress protein family protein | shim_23030 | Not Available | Negative | 2302715 - 2303536 | 29550.3 |
| 4-oxalomesaconate tautomerase | shim_23040 | P0AAV9 | Negative | 2303549 - 2304658 | 38419.7 |
| tripartite tricarboxylate transporter tcta family protein | shim_23050 | Not Available | Negative | 2304643 - 2306673 | 71097.1 |
| hypothetical protein | shim_23060 | Not Available | Negative | 2306752 - 2307840 | 38571.5 |
| transcriptional regulatory protein tctd | shim_23070 | Q9HV32 | Positive | 2307978 - 2308646 | 24565.4 |
| sensor protein qsec | shim_23080 | Not Available | Positive | 2308646 - 2310013 | 48931.8 |
| taurine--pyruvate aminotransferase | shim_23090 | E1V7V7 | Positive | 2310297 - 2311670 | 49271.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
