Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| argininosuccinate lyase 1 | shim_22900 | Q5LXC0 | Positive | 2287843 - 2289231 | 50097.7 |
| hypothetical protein | shim_22910 | Not Available | Positive | 2289764 - 2290081 | 11814.9 |
| diaminopimelate decarboxylase | shim_22920 | Q9KVL7 | Positive | 2290165 - 2291430 | 45232.1 |
| extracellular matrix-binding protein ebh precursor | shim_22930 | Not Available | Positive | 2291491 - 2294079 | 93707.0 |
| hypothetical protein | shim_22940 | Not Available | Negative | 2294116 - 2295195 | 39148.6 |
| cell division atp-binding protein ftse | shim_22950 | P44871 | Positive | 2295341 - 2296018 | 24583.9 |
| cell division abc transporter subunit ftsx | shim_22960 | Not Available | Positive | 2296015 - 2296917 | 31395.1 |
| 1-acyl-sn-glycerol-3-phosphate acyltransferase | shim_22970 | Not Available | Positive | 2296917 - 2297657 | 27383.8 |
| pyridoxamine 5'-phosphate oxidase | shim_22980 | Not Available | Positive | 2297644 - 2298249 | 21714.9 |
| hypothetical protein | shim_22990 | P37463 | Negative | 2298290 - 2299351 | 38303.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
