Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nitrate transport protein nrta precursor | shim_01970 | Q44292 | Negative | 185109 - 186287 | 41914.5 |
| putative transcriptional regulatory protein pdtar | shim_01980 | Not Available | Negative | 186284 - 186868 | 21030.6 |
| 4-formylbenzenesulfonate dehydrogenase tsac1/tsac2 | shim_01990 | P94681 | Negative | 187027 - 187770 | 25982.1 |
| aldehyde dehydrogenase puuc | shim_02000 | Q3YAT5 | Negative | 187844 - 189292 | 50136.6 |
| glutathione import atp-binding protein gsia | shim_02010 | Q0TJM0 | Negative | 189279 - 190883 | 57887.0 |
| glutathione transport system permease protein gsid | shim_02020 | P94312 | Negative | 190880 - 191701 | 28925.1 |
| glutathione transport system permease protein gsic | shim_02030 | Q8VQK4 | Negative | 191698 - 192645 | 34144.9 |
| cupin domain protein | shim_02040 | Not Available | Negative | 192646 - 193053 | 14458.0 |
| glutathione-binding protein gsib precursor | shim_02050 | Q6D3B0 | Negative | 193127 - 194602 | 53195.7 |
| succinyl-diaminopimelate desuccinylase | shim_02060 | Q7N3J4 | Negative | 194627 - 195919 | 47385.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
