Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_22700 | Not Available | Negative | 2270703 - 2271749 | 38068.3 |
| transcription elongation factor grea | shim_22710 | Q5LXA4 | Negative | 2271746 - 2272216 | 17058.3 |
| electron transfer flavoprotein-ubiquinone oxidoreductase | shim_22720 | Q9HZP5 | Positive | 2272429 - 2274126 | 61710.6 |
| lipoprotein nlpi | shim_22730 | Not Available | Positive | 2274444 - 2276156 | 62993.2 |
| 4-diphosphocytidyl-2-c-methyl-d-erythritol kinase | shim_22740 | A4WVE5 | Positive | 2276131 - 2276991 | 30640.2 |
| octaprenyl-diphosphate synthase | shim_22750 | P0AD57 | Negative | 2277005 - 2278006 | 36136.8 |
| hypothetical protein | shim_22760 | Not Available | Positive | 2278078 - 2278299 | 7919.79 |
| trna1(val) (adenine(37)-n6)-methyltransferase | shim_22770 | Not Available | Positive | 2278296 - 2279066 | 27468.1 |
| hypothetical protein | shim_22780 | Not Available | Positive | 2279296 - 2279460 | 6243.43 |
| methyl viologen resistance protein yddg | shim_22790 | D7A5Q8 | Negative | 2279481 - 2280350 | 29877.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
