Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| molybdopterin molybdenumtransferase | shim_22600 | P45210 | Positive | 2257193 - 2258458 | 44141.9 |
| cytochrome c nitrite reductase pentaheme subunit | shim_22610 | Not Available | Negative | 2258508 - 2260466 | 70712.8 |
| hypothetical protein | shim_22620 | Not Available | Negative | 2260624 - 2261874 | 44697.9 |
| tetratricopeptide repeat protein | shim_22630 | Not Available | Negative | 2261871 - 2263415 | 56278.2 |
| von willebrand factor type a domain protein | shim_22640 | Not Available | Negative | 2263412 - 2264398 | 35583.3 |
| hypothetical protein | shim_22650 | Not Available | Negative | 2264395 - 2264877 | 17560.3 |
| hypothetical protein | shim_22660 | Not Available | Negative | 2264877 - 2265821 | 34990.9 |
| atpase rava | shim_22670 | P94474 | Negative | 2265832 - 2266809 | 35819.9 |
| alkaline phosphatase pafa precursor | shim_22680 | Q47910 | Negative | 2266836 - 2268527 | 61560.0 |
| arylsulfatase precursor | shim_22690 | Q32KH5 | Negative | 2268592 - 2270181 | 59376.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
