Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetylornithine/succinyldiaminopimelate aminotransferase | shim_22400 | P30900 | Positive | 2238413 - 2239594 | 41205.4 |
| ornithine carbamoyltransferase | shim_22410 | A3PHL6 | Positive | 2239607 - 2240533 | 34164.7 |
| 2-dehydropantoate 2-reductase | shim_22420 | O28578 | Positive | 2240673 - 2241704 | 36819.7 |
| low-affinity inorganic phosphate transporter 1 | shim_22430 | O26024 | Negative | 2241721 - 2243208 | 51898.7 |
| nudix domain protein | shim_22440 | Not Available | Negative | 2243330 - 2243896 | 21356.6 |
| atp-dependent rna helicase hrpb | shim_22450 | P37024 | Negative | 2243893 - 2246337 | 89301.1 |
| hypothetical protein | shim_22460 | Not Available | Negative | 2246392 - 2247141 | 27251.7 |
| putative gtpase | shim_22470 | P37895 | Positive | 2247173 - 2248156 | 35221.3 |
| threonylcarbamoyl-amp synthase | shim_22480 | P39153 | Negative | 2248167 - 2249114 | 32757.2 |
| acyl-coa dehydrogenase | shim_22490 | Q5LLW7 | Positive | 2249232 - 2250953 | 61001.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
