Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_22000 | Not Available | Negative | 2200875 - 2201120 | 8981.92 |
| hth-type transcriptional repressor kstr2 | shim_22010 | Not Available | Positive | 2201250 - 2201837 | 21769.1 |
| ftsx-like permease family protein | shim_22020 | Not Available | Negative | 2201851 - 2204376 | 87881.1 |
| putative abc transporter atp-binding protein | shim_22030 | Q39T41 | Negative | 2204373 - 2205059 | 24355.3 |
| esterase tesa precursor | shim_22040 | Not Available | Positive | 2205144 - 2205746 | 20609.7 |
| cold shock protein cspa | shim_22050 | Not Available | Negative | 2205978 - 2206184 | 7336.52 |
| nad-dependent dihydropyrimidine dehydrogenase subunit pret | shim_22060 | P76440 | Positive | 2206628 - 2207950 | 46026.2 |
| nad-dependent dihydropyrimidine dehydrogenase subunit prea | shim_22070 | P25889 | Positive | 2207965 - 2209269 | 47160.4 |
| hth-type transcriptional regulator rutr | shim_22080 | Not Available | Negative | 2209491 - 2210108 | 23604.5 |
| hth-type transcriptional regulator rutr | shim_22090 | Q8X4Z7 | Negative | 2210191 - 2210799 | 22530.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
