Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribose import atp-binding protein rbsa | shim_21800 | P0DTT6 | Negative | 2179934 - 2180698 | 27564.1 |
| xylose transport system permease protein xylh | shim_21810 | P0AGI6 | Negative | 2180710 - 2181975 | 44205.4 |
| d-xylose-binding periplasmic protein precursor | shim_21820 | P37387 | Negative | 2182120 - 2183133 | 34515.4 |
| n-acetylglucosamine repressor | shim_21830 | D2PPN2 | Positive | 2183349 - 2184542 | 42872.5 |
| aspic and unbv | shim_21840 | Not Available | Positive | 2184532 - 2186076 | 54774.0 |
| cytochrome c551 peroxidase precursor | shim_21850 | Q49128 | Negative | 2186088 - 2187392 | 46363.2 |
| xylose isomerase | shim_21860 | Q5LV46 | Negative | 2187476 - 2188780 | 48473.9 |
| xylulose kinase | shim_21870 | P29444 | Negative | 2188777 - 2190231 | 50784.9 |
| copper-transporting p-type atpase | shim_21880 | Q9X5X3 | Positive | 2190491 - 2192950 | 84291.5 |
| hth-type transcriptional regulator hmrr | shim_21890 | Q9X5V4 | Positive | 2192947 - 2193342 | 14487.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
