Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glyoxylate/hydroxypyruvate reductase a | shim_21600 | A8GD46 | Negative | 2155499 - 2156428 | 33924.6 |
| glyoxalase-like domain protein | shim_21610 | Not Available | Negative | 2156425 - 2156835 | 15007.7 |
| rod shape-determining protein roda | shim_21620 | P44468 | Negative | 2157044 - 2158183 | 41413.9 |
| stage v sporulation protein d | shim_21630 | P0AD67 | Negative | 2158192 - 2160135 | 70976.9 |
| hypothetical protein | shim_21640 | Not Available | Negative | 2160135 - 2160680 | 20131.8 |
| cell shape-determining protein mrec | shim_21650 | Q70AN6 | Negative | 2160661 - 2161620 | 34811.9 |
| rod shape-determining protein mreb | shim_21660 | A0A0H3C7V4 | Negative | 2161649 - 2162689 | 36553.4 |
| ribosomal rna large subunit methyltransferase j | shim_21670 | P37634 | Positive | 2162930 - 2163715 | 28667.5 |
| na(+)/h(+) antiporter subunit a | shim_21680 | Q52978 | Positive | 2163842 - 2166706 | 102698.0 |
| na(+)/h(+) antiporter subunit c | shim_21690 | Q52980 | Positive | 2166708 - 2167082 | 13181.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
