Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_21500 | Not Available | Positive | 2146210 - 2146437 | 8135.89 |
| 2-(hydroxymethyl)glutarate dehydrogenase | shim_21510 | Q9L7S0 | Positive | 2146562 - 2147512 | 33124.8 |
| phosphomannomutase/phosphoglucomutase | shim_21520 | P45632 | Negative | 2147588 - 2149084 | 54453.2 |
| 2-dehydro-3-deoxyphosphooctonate aldolase | shim_21530 | C0RJA4 | Negative | 2149114 - 2149848 | 25808.2 |
| chromosome partition protein smc | shim_21540 | Not Available | Negative | 2149946 - 2151655 | 62264.3 |
| polysialic acid transport atp-binding protein kpst | shim_21550 | Q65E84 | Negative | 2151633 - 2152292 | 24811.9 |
| putative permease | shim_21560 | Not Available | Negative | 2152580 - 2153614 | 35928.7 |
| helix-turn-helix domain protein | shim_21570 | Not Available | Negative | 2153607 - 2153951 | 12102.5 |
| uracil dna glycosylase superfamily protein | shim_21580 | O86222 | Positive | 2154147 - 2154617 | 17392.9 |
| hypothetical protein | shim_21590 | Not Available | Positive | 2154614 - 2155417 | 28154.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
