Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_21100 | Not Available | Positive | 2100196 - 2101005 | 29413.4 |
| dtdp-4-oxo-6-deoxy-d-allose reductase | shim_21110 | A0R5C5 | Positive | 2100995 - 2101906 | 32986.2 |
| undecaprenyl-phosphate 4-deoxy-4-formamido-l-arabinose transferase | shim_21120 | P74505 | Positive | 2101896 - 2102594 | 25313.7 |
| demethylrebeccamycin-d-glucose o-methyltransferase | shim_21130 | Not Available | Positive | 2102581 - 2103333 | 28112.9 |
| hypothetical protein | shim_21140 | Not Available | Positive | 2103339 - 2104868 | 55799.4 |
| hypothetical protein | shim_21150 | Not Available | Negative | 2104934 - 2105245 | 11465.3 |
| hypothetical protein | shim_21160 | Not Available | Positive | 2105696 - 2105797 | 3846.64 |
| uvrabc system protein b | shim_21170 | Q98I01 | Positive | 2105781 - 2107970 | 81971.5 |
| hypothetical protein | shim_21180 | Not Available | Positive | 2107971 - 2108837 | 33135.5 |
| hypothetical protein | shim_21190 | Not Available | Positive | 2108987 - 2109421 | 15425.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
