Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aldehyde oxidoreductase | shim_21000 | Not Available | Positive | 2084635 - 2089239 | 166613.0 |
| hypothetical protein | shim_21010 | Not Available | Positive | 2089267 - 2090772 | 54816.8 |
| nadh dehydrogenase | shim_21020 | Not Available | Positive | 2090974 - 2091651 | 25381.2 |
| fad-dependent urate hydroxylase | shim_21030 | Q9HWG9 | Positive | 2091767 - 2093044 | 46351.0 |
| alpha/beta hydrolase family protein | shim_21040 | Not Available | Negative | 2093041 - 2093682 | 23305.1 |
| efflux pump periplasmic linker bepf | shim_21050 | Not Available | Positive | 2094341 - 2095501 | 41483.7 |
| efflux pump membrane transporter bepg | shim_21060 | Not Available | Positive | 2095538 - 2098681 | 112764.0 |
| hypothetical protein | shim_21070 | Not Available | Negative | 2098754 - 2099008 | 9224.72 |
| hypothetical protein | shim_21080 | Not Available | Negative | 2099107 - 2099373 | 9779.8 |
| putative s-adenosylmethionine-dependent methyltransferase | shim_21090 | Not Available | Positive | 2099451 - 2100209 | 28120.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
