Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_20900 | Not Available | Negative | 2071492 - 2071650 | 5891.04 |
| hypothetical protein | shim_20910 | Not Available | Positive | 2071738 - 2072286 | 20158.9 |
| hypothetical protein | shim_20920 | Not Available | Positive | 2072447 - 2072707 | 9606.63 |
| hypothetical protein | shim_20930 | P44023 | Positive | 2073141 - 2074547 | 49571.9 |
| arginine deiminase | shim_20940 | B3PWQ6 | Positive | 2074680 - 2075891 | 44678.2 |
| ornithine carbamoyltransferase, catabolic | shim_20950 | A3N1W5 | Positive | 2075928 - 2076926 | 36932.1 |
| carbamate kinase 1 | shim_20960 | Not Available | Positive | 2076931 - 2077866 | 33485.1 |
| calcium-transporting atpase | shim_20970 | O34431 | Positive | 2077946 - 2080684 | 97618.6 |
| hth-type transcriptional regulator virs | shim_20980 | Not Available | Positive | 2081159 - 2082268 | 41015.0 |
| phosphoesterase family protein | shim_20990 | P08540 | Positive | 2082553 - 2084598 | 74627.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
