Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | shim_01770 | Not Available | Positive | 160684 - 161520 | 31421.2 |
| adenosylmethionine-8-amino-7-oxononanoate aminotransferase | shim_01780 | O94562 | Negative | 161521 - 162843 | 46823.9 |
| 3-keto-5-aminohexanoate cleavage enzyme | shim_01790 | Not Available | Negative | 162840 - 163679 | 30031.9 |
| hth-type transcriptional regulator murr | shim_01800 | Not Available | Positive | 163801 - 164667 | 31066.8 |
| nmt1/thi5 like protein | shim_01810 | Not Available | Positive | 164750 - 165712 | 33660.2 |
| dctm-like transporter | shim_01820 | Not Available | Positive | 165798 - 168431 | 93890.7 |
| universal stress protein f | shim_01830 | Not Available | Positive | 168444 - 168869 | 15499.7 |
| putative glutathione-dependent formaldehyde-activating enzyme | shim_01840 | Not Available | Negative | 168966 - 169373 | 14495.3 |
| hemin uptake protein hemp | shim_01850 | Not Available | Positive | 169634 - 169771 | 5096.17 |
| iron-regulated protein a precursor | shim_01860 | Not Available | Positive | 169819 - 171075 | 43416.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
