Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_20800 | Not Available | Positive | 2062957 - 2063205 | 8409.29 |
| hypothetical protein | shim_20810 | Not Available | Positive | 2063513 - 2064370 | 32337.8 |
| hypothetical protein | shim_20820 | Not Available | Positive | 2064380 - 2065216 | 31482.9 |
| glyoxalase-like domain protein | shim_20830 | Not Available | Negative | 2065339 - 2065737 | 14542.0 |
| hypothetical protein | shim_20840 | Not Available | Negative | 2065809 - 2066102 | 9770.18 |
| hypothetical protein | shim_20850 | Not Available | Negative | 2066092 - 2067141 | 38812.1 |
| hypothetical protein | shim_20860 | Not Available | Negative | 2067138 - 2067542 | 14105.3 |
| fad binding domain protein | shim_20870 | Q9HDX8 | Negative | 2067539 - 2069026 | 53885.9 |
| lipase 3 precursor | shim_20880 | Not Available | Negative | 2069028 - 2070011 | 35189.6 |
| adenylate cyclase 1 | shim_20890 | Not Available | Negative | 2070169 - 2071470 | 46663.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
