Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| error-prone dna polymerase | shim_20600 | Q5LVN0 | Negative | 2048230 - 2048586 | 12950.9 |
| ferredoxin-6 | shim_20610 | P80306 | Positive | 2048714 - 2049037 | 11570.7 |
| hypothetical protein | shim_20620 | Not Available | Positive | 2049037 - 2049792 | 27488.3 |
| transcriptional regulatory protein uhpa | shim_20630 | Not Available | Negative | 2049868 - 2050479 | 23330.6 |
| phosphoribosylamine--glycine ligase | shim_20640 | Q8G2B1 | Negative | 2050555 - 2051817 | 44136.4 |
| exodeoxyribonuclease 7 large subunit | shim_20650 | Q1GF88 | Positive | 2051892 - 2053412 | 54764.5 |
| hypothetical protein | shim_20660 | Not Available | Negative | 2053409 - 2053801 | 14617.1 |
| alkane 1-monooxygenase 2 | shim_20670 | Q0VTH3 | Negative | 2053840 - 2055009 | 43031.5 |
| 50s ribosomal protein l33 | shim_20680 | Q5LP83 | Positive | 2055072 - 2055239 | 6380.96 |
| acetyltransferase (gnat) family protein | shim_20690 | Not Available | Positive | 2055344 - 2055859 | 18865.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
