Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| soluble lytic murein transglycosylase precursor | shim_20500 | Not Available | Positive | 2038301 - 2039134 | 28971.8 |
| l-serine dehydratase 2 | shim_20510 | O86564 | Negative | 2039189 - 2040562 | 47896.3 |
| glutathione s-transferase | shim_20520 | Not Available | Negative | 2040563 - 2041261 | 25381.7 |
| ribose-5-phosphate isomerase a | shim_20530 | Q5LTT5 | Positive | 2041471 - 2042259 | 28153.7 |
| glutathione amide reductase | shim_20540 | P48639 | Positive | 2042275 - 2043630 | 48854.8 |
| modulator of ftsh protease hflk | shim_20550 | P0ABC8 | Positive | 2043713 - 2044843 | 40264.2 |
| modulator of ftsh protease hflc | shim_20560 | P44545 | Positive | 2044845 - 2045717 | 32440.6 |
| hypothetical protein | shim_20570 | Not Available | Positive | 2045717 - 2045911 | 6710.68 |
| putative periplasmic serine endoprotease degp-like precursor | shim_20580 | P54925 | Positive | 2046078 - 2047547 | 52010.6 |
| hypothetical protein | shim_20590 | Not Available | Negative | 2047616 - 2048158 | 19962.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
