Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bacterial type ii secretion system protein f domain protein | shim_20400 | Not Available | Negative | 2028161 - 2029141 | 35543.9 |
| bacterial type ii secretion system protein f domain protein | shim_20410 | Not Available | Negative | 2029155 - 2030123 | 35619.2 |
| putative conjugal transfer protein | shim_20420 | P9WMT2 | Negative | 2030129 - 2031607 | 54222.0 |
| septum site-determining protein mind | shim_20430 | Not Available | Negative | 2031623 - 2032870 | 45767.7 |
| outer membrane lipoprotein omp16 precursor | shim_20440 | Not Available | Negative | 2033157 - 2033810 | 23600.8 |
| type ii secretion system protein d precursor | shim_20450 | P55702 | Negative | 2033823 - 2035220 | 49091.6 |
| hypothetical protein | shim_20460 | Not Available | Negative | 2035446 - 2036300 | 30578.9 |
| hypothetical protein | shim_20470 | Not Available | Negative | 2036828 - 2037016 | 6301.43 |
| hypothetical protein | shim_20480 | Not Available | Negative | 2037306 - 2037491 | 6268.41 |
| hypothetical protein | shim_20490 | Not Available | Negative | 2037769 - 2037957 | 6301.43 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
