Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_20200 | P76046 | Positive | 2008233 - 2009648 | 51473.1 |
| hypothetical protein | shim_20210 | Q98M18 | Positive | 2009645 - 2010640 | 34986.2 |
| vit family protein | shim_20220 | Q6ERE5 | Positive | 2010653 - 2011366 | 25122.6 |
| group 3 truncated hemoglobin ctb | shim_20230 | Not Available | Negative | 2011387 - 2011794 | 15080.1 |
| hypothetical protein | shim_20240 | Not Available | Negative | 2011855 - 2012286 | 16090.1 |
| isoleucine--trna ligase | shim_20250 | Q5LNR7 | Positive | 2012502 - 2015411 | 109859.0 |
| methylated-dna--protein-cysteine methyltransferase | shim_20260 | Q9ZET8 | Positive | 2015532 - 2015984 | 15676.8 |
| phosphatidylcholine synthase | shim_20270 | D0B707 | Negative | 2015989 - 2016684 | 26032.1 |
| 2-hydroxy-3-oxopropionate reductase | shim_20280 | Not Available | Negative | 2016797 - 2017627 | 29410.1 |
| putative gtp-binding protein engb | shim_20290 | Q1GJX8 | Negative | 2017673 - 2018326 | 23982.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
