Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane efflux protein bepc precursor | shim_20100 | Q8G0Y6 | Positive | 1998094 - 1999515 | 50469.3 |
| hypothetical protein | shim_20110 | Not Available | Positive | 1999589 - 2000782 | 42875.7 |
| hypothetical protein | shim_20120 | Not Available | Negative | 2000854 - 2001174 | 11453.3 |
| elongation factor p | shim_20130 | Q28M91 | Positive | 2001392 - 2001955 | 21058.2 |
| trna-modifying protein ygfz | shim_20140 | B8JMH0 | Negative | 2002092 - 2002829 | 26725.0 |
| pgl/p-hbad biosynthesis glycosyltransferase | shim_20150 | Not Available | Positive | 2002914 - 2003597 | 24319.3 |
| d-amino acid dehydrogenase small subunit | shim_20160 | B9JI94 | Positive | 2004349 - 2005590 | 44091.0 |
| tripartite atp-independent periplasmic transporter, dctq component | shim_20170 | Not Available | Positive | 2005804 - 2006460 | 24116.8 |
| hypothetical protein | shim_20180 | Not Available | Positive | 2006622 - 2006978 | 12137.2 |
| trna pseudouridine synthase a | shim_20190 | Q1GE00 | Negative | 2007338 - 2008123 | 28546.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
