Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sialic acid-binding periplasmic protein siap precursor | shim_20000 | Not Available | Positive | 1990438 - 1991499 | 37991.8 |
| sialic acid trap transporter permease protein siat | shim_20010 | Not Available | Positive | 1991529 - 1993514 | 70533.8 |
| hypothetical protein | shim_20020 | Not Available | Negative | 1993977 - 1994177 | 7155.38 |
| hypothetical protein | shim_20030 | Not Available | Positive | 1994551 - 1995192 | 23853.2 |
| arc-like dna binding domain protein | shim_20040 | Not Available | Negative | 1995195 - 1995470 | 10382.5 |
| hypothetical protein | shim_20050 | Not Available | Positive | 1995594 - 1995788 | 7267.66 |
| hypothetical protein | shim_20060 | Not Available | Positive | 1995813 - 1996004 | 6858.1 |
| tyrosine recombinase xerc | shim_20070 | Not Available | Positive | 1996001 - 1997032 | 40120.3 |
| Trna-cys | Not Available | Not Available | Positive | 1997101 - 1997174 | Not Available |
| protein-l-isoaspartate o-methyltransferase | shim_20090 | A0LL58 | Positive | 1997394 - 1998047 | 23366.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
