Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sulfite exporter taue/safe | shim_19890 | Not Available | Positive | 1979760 - 1980587 | 28268.9 |
| glutathione-dependent formaldehyde-activating enzyme | shim_19900 | Not Available | Negative | 1980900 - 1981310 | 14501.2 |
| 3-keto-5-aminohexanoate cleavage enzyme | shim_19910 | E3PRK0 | Negative | 1981791 - 1982639 | 30475.4 |
| 3-alpha-hydroxysteroid dehydrogenase/carbonyl reductase | shim_19930 | P0DMP5 | Negative | 1983877 - 1984659 | 27725.0 |
| fmn-dependent nadph-azoreductase | shim_19940 | D3KVM6 | Negative | 1984740 - 1985288 | 19289.1 |
| hydroxyquinol 1,2-dioxygenase | shim_19950 | A1IIX3 | Negative | 1985285 - 1986184 | 34131.2 |
| maleylacetate reductase | shim_19960 | A1IIX4 | Negative | 1986213 - 1987280 | 37132.2 |
| putative hth-type transcriptional regulator ydfh | shim_19970 | Not Available | Positive | 1987469 - 1988188 | 26538.1 |
| putative aldehyde dehydrogenase yfmt | shim_19980 | Not Available | Positive | 1988249 - 1989745 | 53677.2 |
| hypothetical protein | shim_19990 | Q9C1K0 | Positive | 1989757 - 1990386 | 24112.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
