Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia sp. SK013
Accession NumberLAJH00000000.1
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| phage head-tail joining protein | shim_11040 | Not Available | - | 1102753 - 1103097 | 12263.6 |
| phage gp6-like head-tail connector protein | shim_11050 | Not Available | - | 1103094 - 1103693 | 21561.9 |
| Phage major capsid protein | shim_11060 | Not Available | - | 1103832 - 1104818 | 35265.8 |
| Putative prohead protease | shim_11070 | Not Available | - | 1104850 - 1105275 | 15510.7 |
| hypothetical protein | shim_11080 | Not Available | - | 1105236 - 1105400 | 6286.63 |
| hypothetical protein | shim_11090 | Not Available | - | 1105422 - 1105649 | 8532.43 |
| Portal protein | shim_11100 | Q1RIH4 | - | 1105642 - 1106820 | 42332.2 |
| Terminase large subunit | shim_11110 | Not Available | - | 1106975 - 1107523 | 19422.4 |
| Large packaging protein | shim_11120 | Not Available | - | 1107542 - 1108387 | 30645.1 |
| putative aminodeoxychorismate lyase | shim_11130 | P44720 | - | 1108780 - 1109931 | 41488.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.