Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| quercetin 2,3-dioxygenase | shim_19790 | P58114 | Positive | 1969342 - 1970274 | 34158.4 |
| riboflavin transporter | shim_19800 | A0A0H2ZHZ4 | Positive | 1970419 - 1971279 | 30509.8 |
| hypothetical protein | shim_19810 | Not Available | Positive | 1971339 - 1971992 | 23214.5 |
| hth-type transcriptional regulator beti | shim_19820 | Q985M2 | Negative | 1971997 - 1972650 | 24521.4 |
| nad/nadp-dependent betaine aldehyde dehydrogenase 1 | shim_19830 | A3PI00 | Positive | 1972747 - 1974198 | 51624.5 |
| hypothetical protein | shim_19840 | Not Available | Negative | 1974789 - 1974893 | 4119.24 |
| arabinose operon regulatory protein | shim_19850 | Not Available | Negative | 1975070 - 1975873 | 30054.0 |
| 2-aminomuconate deaminase | shim_19860 | Not Available | Positive | 1976138 - 1976614 | 17391.5 |
| lactate-binding periplasmic protein precursor | shim_19870 | Not Available | Positive | 1976628 - 1977701 | 38449.7 |
| sialic acid trap transporter permease protein siat | shim_19880 | Not Available | Positive | 1977698 - 1979662 | 67987.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
