Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ecsc protein family protein | shim_19590 | Not Available | Positive | 1945983 - 1946762 | 26504.1 |
| phosphoenolpyruvate-protein phosphotransferase | shim_19600 | P37177 | Negative | 1946772 - 1949015 | 82016.4 |
| aspartokinase | shim_19610 | O69077 | Negative | 1949227 - 1950462 | 44210.1 |
| arsenate reductase | shim_19620 | P44589 | Negative | 1950641 - 1950979 | 12251.0 |
| dihydroorotate dehydrogenase (quinone) | shim_19630 | B9KNA2 | Negative | 1950976 - 1952043 | 37361.8 |
| hypothetical protein | shim_19640 | Not Available | Negative | 1952040 - 1952381 | 12365.5 |
| trifunctional nucleotide phosphoesterase protein yfkn precursor | shim_19650 | P29240 | Positive | 1952506 - 1954065 | 54555.2 |
| hypothetical protein | shim_19660 | Not Available | Positive | 1954131 - 1954436 | 11233.5 |
| sulfotransferase domain protein | shim_19670 | O67178 | Negative | 1954440 - 1956170 | 63855.5 |
| putative sos response-associated peptidase yedk | shim_19680 | O31916 | Positive | 1956268 - 1956930 | 24115.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
