Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hth-type transcriptional regulator dmlr | shim_19490 | Not Available | Negative | 1936489 - 1937415 | 34236.1 |
| cytochrome c | shim_19500 | Not Available | Positive | 1937530 - 1938762 | 46054.0 |
| phosphoglycolate phosphatase, chromosomal | shim_19510 | A3PNX3 | Positive | 1938786 - 1939445 | 23763.2 |
| pa14 domain protein | shim_19520 | Not Available | Positive | 1939537 - 1940112 | 20253.2 |
| bicarbonate transporter bica | shim_19530 | P55189 | Positive | 1940369 - 1942006 | 57408.6 |
| swarming motility protein ybia | shim_19540 | Q5UR67 | Negative | 1942216 - 1942734 | 19564.1 |
| membrane transport protein | shim_19550 | Not Available | Positive | 1943301 - 1944212 | 31125.2 |
| flavin reductase like domain protein | shim_19560 | Q9RRA9 | Negative | 1944267 - 1944872 | 22360.4 |
| acetyltransferase (gnat) family protein | shim_19570 | Not Available | Positive | 1944970 - 1945464 | 17711.2 |
| hypothetical protein | shim_19580 | Not Available | Negative | 1945612 - 1945815 | 7756.16 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
